statsmodels.stats.mediation.Mediation

class statsmodels.stats.mediation.Mediation(outcome_model, mediator_model, exposure, mediator=None, moderators=None, outcome_fit_kwargs=None, mediator_fit_kwargs=None)

Conduct a mediation analysis.

Parameters

outcome_modelstatsmodels model

Regression model for the outcome. Predictor variables include the treatment/exposure, the mediator, and any other variables of interest.

mediator_modelstatsmodels model

Regression model for the mediator variable. Predictor variables include the treatment/exposure and any other variables of interest.

exposurestr or (int, int) tuple

The name or column position of the treatment/exposure variable. If positions are given, the first integer is the column position of the exposure variable in the outcome model and the second integer is the position of the exposure variable in the mediator model. If a string is given, it must be the name of the exposure variable in both regression models.

mediator{str, int}

The name or column position of the mediator variable in the outcome regression model. If None, infer the name from the mediator model formula (if present).

moderatorsdict

Map from variable names or index positions to values of moderator variables that are held fixed when calculating mediation effects. If the keys are index position they must be tuples (i, j) where i is the index in the outcome model and j is the index in the mediator model. Otherwise the keys must be variable names.

outcome_fit_kwargsdict-like

Keyword arguments to use when fitting the outcome model.

mediator_fit_kwargsdict-like

Keyword arguments to use when fitting the mediator model.

Returns a ``MediationResults`` object.

Notes

The mediator model class must implement get_distribution.

References

Imai, Keele, Tingley (2010). A general approach to causal mediation analysis. Psychological Methods 15:4, 309-334. http://imai.princeton.edu/research/files/BaronKenny.pdf

Tingley, Yamamoto, Hirose, Keele, Imai (2014). mediation : R package for causal mediation analysis. Journal of Statistical Software 59:5. http://www.jstatsoft.org/v59/i05/paper

Examples

A basic mediation analysis using formulas:

>>> import statsmodels.api as sm
>>> import statsmodels.genmod.families.links as links
>>> probit = links.probit
>>> outcome_model = sm.GLM.from_formula("cong_mesg ~ emo + treat + age + educ + gender + income",
...                                     data, family=sm.families.Binomial(link=probit()))
>>> mediator_model = sm.OLS.from_formula("emo ~ treat + age + educ + gender + income", data)
>>> med = Mediation(outcome_model, mediator_model, "treat", "emo").fit()
>>> med.summary()

A basic mediation analysis without formulas. This may be slightly faster than the approach using formulas. If there are any interactions involving the treatment or mediator variables this approach will not work, you must use formulas.

>>> import patsy
>>> outcome = np.asarray(data["cong_mesg"])
>>> outcome_exog = patsy.dmatrix("emo + treat + age + educ + gender + income", data,
...                              return_type='dataframe')
>>> probit = sm.families.links.probit
>>> outcome_model = sm.GLM(outcome, outcome_exog, family=sm.families.Binomial(link=probit()))
>>> mediator = np.asarray(data["emo"])
>>> mediator_exog = patsy.dmatrix("treat + age + educ + gender + income", data,
...                               return_type='dataframe')
>>> mediator_model = sm.OLS(mediator, mediator_exog)
>>> tx_pos = [outcome_exog.columns.tolist().index("treat"),
...           mediator_exog.columns.tolist().index("treat")]
>>> med_pos = outcome_exog.columns.tolist().index("emo")
>>> med = Mediation(outcome_model, mediator_model, tx_pos, med_pos).fit()
>>> med.summary()

A moderated mediation analysis. The mediation effect is computed for people of age 20.

>>> fml = "cong_mesg ~ emo + treat*age + emo*age + educ + gender + income",
>>> outcome_model = sm.GLM.from_formula(fml, data,
...                                      family=sm.families.Binomial())
>>> mediator_model = sm.OLS.from_formula("emo ~ treat*age + educ + gender + income", data)
>>> moderators = {"age" : 20}
>>> med = Mediation(outcome_model, mediator_model, "treat", "emo",
...                 moderators=moderators).fit()

Methods

fit([method, n_rep])

Fit a regression model to assess mediation.